PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG252700.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 391aa    MW: 40852.2 Da    PI: 7.6192
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG252700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.61.1e-13117167255
                          HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +++h ++Er+RR+++N+ ++ Lr+l+P     + k+ + a+i   +v+YIk+Lq
  Pavir.1KG252700.2.p 117 KMSHIAVERNRRKQMNEHLAVLRSLMPCF---YIKRGDQASIIGGVVDYIKELQ 167
                          789*************************9...9********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.663115166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-17115190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.31E-14117171No hitNo description
PfamPF000106.4E-11117167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-13117178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-12121172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MGDGAMCELL VDDHSELRHL SGAEDLFSIL ETWEECVNGA GGGGGSSAAA MPAYSQSSTG  60
GSESAGAVEG ARPTANSRRR AGDEENGVGR GAPMRKKQKG SSTAAAQDAA ADEGAAKMSH  120
IAVERNRRKQ MNEHLAVLRS LMPCFYIKRG DQASIIGGVV DYIKELQQVL RSLEAKKHRK  180
AYAEQVLSPR PAVPAASPRP LLKSTPPLSP RVAVPISPRT PTPGSPYKPS GGGGGGAASS  240
RPPHPATAAC YMMPSPAMTP TTSSSSSSYA HDQQQQLYPT TAQPYLPTLD SLVTELAARA  300
AGGRPAAAGL TLPDVKVEFA GPNLVLKTVS RRAPGQALKI IAALESLSLE ILHVSVSTLD  360
DTMVHSFTIK IGIECELSAE ELVHEIQQTF *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17798RRRAGDEENGVGRGAPMRKKQK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.179403e-78stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0369011e-104BT036901.1 Zea mays full-length cDNA clone ZM_BFb0146M03 mRNA, complete cds.
GenBankEU9758961e-104EU975896.1 Zea mays clone 504696 DNA binding protein mRNA, complete cds.
GenBankKJ7268651e-104KJ726865.1 Zea mays clone pUT3406 bHLH transcription factor (bHLH24) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951281.10.0PREDICTED: transcription factor SPEECHLESS-like
SwissprotQ700C72e-46SPCH_ARATH; Transcription factor SPEECHLESS
TrEMBLK3YT870.0K3YT87_SETIT; Uncharacterized protein
STRINGSi017482m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.14e-39bHLH family protein